Relieve pain, prevent injury, and increase performance. Get customized mobility coaching developed by Dr. Kelly Starrett.
Have you had anyone work with your on technique for the skills where you experience the problem?
Have someone video tape you squatting, running etc so you can see exactly what you are doing. This will help you to identify where your knee is tracking and why. Identifying the cause of the issue is key in addressing it so the problem is resolved.
Seeing the movement can help identify where you need to start addressing the issue.